After Godzilla disappeared in Mount Mihara, the wreckage of Super X was recovered. The commando of the ruthlessly profitable biotechnology conglomerate found the G cell, but it was stolen by the assassin SSS9 employed by the Saladiya Republic. The Middle East oil country Saladiya plans to use the power of self-regeneration in Godzilla cells to create wheat that can grow in the desert, but biotechnology companies jointly blew up Saladiya’s laboratory and destroyed G cells while also hosting the project. Dr. Shirakami’s daughter Yingrijia died in the bombing, and Dr. Shirakami returned to Japan sadly.
Five years later, the volcanic activity on Mount Mihara became more active, and the superpowers of the girl Miki Sanji made the government discover that Godzilla had started to be active again. Godzilla cells were taken out of the storage room to study nucleophagous bacteria (ANB), and Dr. Baishen also participated in the project. Five years ago, in order to preserve his daughter's life, Shirakami merged Yingrijia's cells with rose cells. Now, he wants to save these roses, so he secretly added Godzilla cells to the rose cells.
The biotechnology consortium sent people to Dr. Baishen’s laboratory to steal ANB, but was defeated by SSS9. Suddenly the three of SSS9 were attacked by something with tentacles. The people in the union were killed, and SSS9 escaped. A few days later, Biolandi, a giant creature of Lake Ashinoko, appeared, which combined human, rose, and Godzilla cells.
After the completion of ANB, the biotechnology companies jointly threatened to use explosives to make Godzilla emerge from the volcano unless ANB was handed over to them. When the government and the United States made a deal, the ambush SSS9 appeared and snatched ANB and the detonator. Godzilla was released from Mount Mihara and headed towards Tokyo Bay.
Godzilla was intercepted by Super X2 in the Uraga Strait. Equipped with a mirror that can reflect the monster hotline, Super X2 hits Godzilla hard. But Godzilla attacked fiercely, and finally caused the mirror to melt and the Super X2 lost control. At this time, Godzilla felt Biolandi, so he turned to Lake Ashinoko. Godzilla easily defeated Bioranti, set it on fire, and ash scattered in the sky. After some battle, the ANB shot into Godzilla's body worked. Godzilla, whose strength was obviously weakened, walked awkwardly into the sea and into the uncertain future.
